I got this from the Speed Triple Forum:
"The latest version of Tune Edit is available on the Tuneboy website. 188.8.131.52. To get this version, you need to download Tune Edit only, not the package including TuneBoy. For some reason if you download the package, you get an older version of TuneEdit 3.9.1.?.
The new v184.108.40.206 version fixes some problems with the 2009 bikes that were keeping TuneEdit from recognizing the tune loaded into the ECU that happened with v220.127.116.11".
The TuneBoy site has it listed as 18.104.22.168, but it is 22.214.171.124. You can look at the help tab in tune editor to check your version.